Produces a data frame of all spots from filtered tracks, ordered by track number. A warning is generated if the scaling is in pixels rather than real units.
readTrackMateXML(XMLpath)path to the xml file
list of two data frames
xmlPath <- system.file("extdata", "ExampleTrackMateData.xml", package="TrackMateR")
tmObj <- readTrackMateXML(XMLpath = xmlPath)
#> Units are: 1 pixel and 0.07002736 s
#> Spatial units are in pixels - consider transforming to real units
#> Collecting spot data. Using 4 cores
#> Matching track data...
#> Calculating distances...
# get the track data in a data frame
tmDF <- tmObj[[1]]
# get the calibration data in a data frame
calibrationDF <- tmObj[[2]]