Current limitations
There are some limitations to SuperPlotR. This vignette covers them and offers solutions where possible.
Conditions and Replicates are categories
If you have a dataset where the conditions and replicates are numeric, SuperPlotR converts them to character for plotting. This is the intended behaviour for a SuperPlot.
Currently, if your data has Conditions that are numeric, for example time points, and these are unevenly spaced, e.g. 0, 1, 3, 9 hours; then these will appear evenly spaced on the x-axis. This is a limitation of the current implementation. Raise an issue if you would like this to be changed.